gi_545778205_gb_U000_343

cmsearch-Rfam

Family :

sX9

Id:

RF02228

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

29.1

E-value:

0.0049

From sequence:

2543724

To sequence:

2543658

Alignments:

                                                                                     NC
                               :<<<<<_____>>>>>,,,<<<<-<____>->>>>----------~~~~~~:: CS
               RF02228       1 AUGuaCCACuCGuaCACUccGGuUCCuccGCgCCguCCGcaCCCA*[29]*CC 76     
                               A:GUAC+A   GUAC:CUCC:GUU CUCC CGC:GU CG++ CCA      CC
  gi_545778205_gb_U000 2543724 ACGUACUAUGUGUACGCUCCGGUUUCUCCGCGCUGUUCGUGUCCA*[20]*CC 2543658
                               ****************************************99987...6..** PP

RNAfold
>gi_545778205_gb_U000_343
AACAGGCGUAAUUGUUGCAGUCAGUUUGGACACGAACAGCGCGGAGAAAC
CGGAGCGUACACAUAGUACGUGAGGA
.....((((...((((...(((......)))...)))))))).......((...((((((.....))))))..)). (-19.70)

Length sequence

: 76

Length match:

65