gi_545778205_gb_U000_357

cmsearch-Rfam

Family :

tp2

Id:

RF02030

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

102.0

E-value:

4.4e-19

From sequence:

123014

To sequence:

122901

Alignments:

                               v                                                      v         v                 NC
                              <<<<-----------------<.<<<----------<<<<<<<<<<--<<<<<-<<<<<_____>>>>>->>>>>-->>>>>> CS
               RF02030      1 GGuAUUCCUUAUCUgUuUaaua.cGcUgAuUUaUuUgGaGCCUgUCUUccuGugcUuucaccaugaaAgcaCaggAAGAcAGG 82    
                              G UAUUCCUUAUCU+U+UAAUA CG:UGA UU+U+UGG::CCUGUC +::UG:+CU UC+CC  GA AGC:CA::AAGACAGG
  gi_545778205_gb_U000 123014 GUUAUUCCUUAUCUAUCUAAUAaCGUUGAGUUUUCUGGAACCUGUCCCAUUGAACUCUCGCCG-GAAAGCUCAAUAAGACAGG 122933
                              ***************99998877****************************************.******************* PP

                                             v                 NC
                              >>>>>>>>----->>>>::::::::::::::: CS
               RF02030     83 CcCugCguuUAGUUgCCGCuuucauuauuaaa 114   
                              ::CU:CGUUUAGUUG CGC  U++U+++U   
  gi_545778205_gb_U000 122932 UUCUACGUUUAGUUGCCGCGCUUUUAUAUGCG 122901
                              ******************************** PP

RNAfold
>gi_545778205_gb_U000_357
GCAUAUAAAAGCGCGGCAACUAAACGUAGAACCUGUCUUAUUGAGCUUUC
CGGCGAGAGUUCAAUGGGACAGGUUCCAGAAAACUCAACGUUAUUAGAUA
GAUAAGGAAUAAC
((........))(((.........))).((((((((((((((((((((((....))))))))))))))))))))))............(.(((((.....))))).)...... (-38.30)

Length sequence

: 113

Length match:

112