gi_545778205_gb_U000_363

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

59.9

E-value:

1.9e-12

From sequence:

1097652

To sequence:

1097568

Alignments:

                                                                                                                 NC
                               (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,.............,.,<<<<<_______>>>>>)) CS
               RF00005       1 GgagauaUAGCucAgUGGU..AgaGCgucgGaCUuaaAAuCcgaag.............g.cgcgGGUUCgAaUCCcgcua 65     
                               GG:GA::U+ C::AGUGG   A::G G::: :CU+ AAA: :::+                CG:GGGUUCGAAUCCC:C::
  gi_545778205_gb_U000 1097652 GGUGAGGUGUCCGAGUGGCugAAGGAGCACGCCUGGAAAGUGUGU-auacggcaacgua-uCGGGGGUUCGAAUCCCCCCC 1097574
                               ****************7777*************************.8***********6.4******************** PP

                                      NC
                               ))))): CS
               RF00005      66 ucucCa 71     
                               UC:CC+
  gi_545778205_gb_U000 1097573 UCACCG 1097568
                               ****** PP

>>

RNAfold
>gi_545778205_gb_U000_363
GGUGAGGGGGGGAUUCGAACCCCCGAUACGUUGCCGUAUACACACUUUCC
AGGCGUGCUCCUUCAGCCACUCGGACACCUCACC
((((((((((((.......))))).(((((....)))))........(((.((.(.(((.....)))).)).)))..))))))) (-29.90)

Length sequence

: 84

Length match:

83