gi_545778205_gb_U000_365

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

60.1

E-value:

1.7e-12

From sequence:

1287622

To sequence:

1287541

Alignments:

                                                                                                                 NC
                               (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,...........,,<<<<<_______>>>>>))))) CS
               RF00005       1 GgagauaUAGCucAgUGGU..AgaGCgucgGaCUuaaAAuCcgaag...........gcgcgGGUUCgAaUCCcgcuaucu 68     
                               GG:G:::U :C::AG GG   A::G:+:C:GACU++AAAUC:G:              CG::GGUUCGAAUCC::C:::C:
  gi_545778205_gb_U000 1287622 GGUGGGGUUCCCGAGCGGCcaAAGGGAGCAGACUGUAAAUCUGCC-gucaucgacuu-CGAAGGUUCGAAUCCUUCCCCCA 1287544
                               ****************9999*************************.8********85.*********************** PP

                                   NC
                               )): CS
               RF00005      69 cCa 71     
                               CCA
  gi_545778205_gb_U000 1287543 CCA 1287541
                               *** PP

>>

RNAfold
>gi_545778205_gb_U000_365
GGUGGGGGAAGGAUUCGAACCUUCGAAGUCGAUGACGGCAGAUUUACAGU
CUGCUCCCUUUGGCCGCUCGGGAACCCCACC
((((((((((((.......)))))...(((...))).(((((((...)))))))((((...........)))).))))))) (-31.40)

Length sequence

: 81

Length match:

80