gi_545778205_gb_U000_368

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

59.6

E-value:

2.3e-12

From sequence:

1991901

To sequence:

1991818

Alignments:

                                                                                                                 NC
                               (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,............,,<<<<<_______>>>>>)))) CS
               RF00005       1 GgagauaUAGCucAgU.GGU.AgaGCgucgGaCUuaaAAuCcgaag............gcgcgGGUUCgAaUCCcgcuauc 67     
                               ::::::AU+G:::A+U GGU  :::C+::GGA+UUAAAAUCC::              G+GCGGGUUC+A UCCCGCU:::
  gi_545778205_gb_U000 1991901 GCCCGGAUGGUGGAAUcGGUaGACACAAGGGAUUUAAAAUCCCUC-ggcguucgcgcuGUGCGGGUUCAAGUCCCGCUCCG 1991822
                               *********************************************.8**********85********************** PP

                                    NC
                               ))): CS
               RF00005      68 ucCa 71     
                               :::A
  gi_545778205_gb_U000 1991821 GGUA 1991818
                               **** PP

>>

RNAfold
>gi_545778205_gb_U000_368
ACCCGGAGCGGGACUUGAACCCGCACAGCGCGAACGCCGAGGGAUUUUAA
AUCCCUUGUGUCUACCGAUUCCACCAUCCGGGC
.(((((((((((.......)))))...(((....)))(((((((((...))))))))).(((....))).......)))))). (-33.80)

Length sequence

: 83

Length match:

82