gi_545778205_gb_U000_371

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

64.3

E-value:

1.2e-13

From sequence:

2043557

To sequence:

2043471

Alignments:

                                                                                                                 NC
                               (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,...............,.,<<<<<_______>>>>> CS
               RF00005       1 GgagauaUAGCucAgUGGU..AgaGCgucgGaCUuaaAAuCcgaag...............g.cgcgGGUUCgAaUCCcgc 63     
                               GGAGA:AU+:C::AG GG   A::G:+:CGG:CU  AAA:CCG:A                  CG:GGGUUC+AAUCCC:C
  gi_545778205_gb_U000 2043557 GGAGAGAUGCCGGAGCGGCugAACGGACCGGUCUCGAAAACCGGA-guaggggcaacucua-cCGGGGGUUCAAAUCCCCC 2043479
                               ****************7777*************************.8*************5.5****************** PP

                                        NC
                               ))))))): CS
               RF00005      64 uaucucCa 71     
                               U:UCUCC+
  gi_545778205_gb_U000 2043478 UCUCUCCG 2043471
                               ******** PP

>>

RNAfold
>gi_545778205_gb_U000_371
GGAGAGAGGGGGAUUUGAACCCCCGGUAGAGUUGCCCCUACUCCGGUUUU
CGAGACCGGUCCGUUCAGCCGCUCCGGCAUCUCUCC
((((((((((((.......)))))(((((........)))))(((((((...)))))))........((((...)))).))))))) (-37.20)

Length sequence

: 86

Length match:

85