gi_545778205_gb_U000_388

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

70.0

E-value:

2.9e-15

From sequence:

262871

To sequence:

262943

Alignments:

                                                        v               v                               NC
                              (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,.,<<<<<_______>>>>>))))))): CS
               RF00005      1 GgagauaUAGCucAgU.GGUAgaGCgucgGaCUuaaAAuCcgaagg.cgcgGGUUCgAaUCCcgcuaucucCa 71    
                              G::GAUAUAGCUCAGU GGUAGAGC+ CG:A+U  +AAU:CG AGG C:::GGUUCGA UCC:::UAUC::CA
  gi_545778205_gb_U000 262871 GCCGAUAUAGCUCAGUuGGUAGAGCAGCGCAUUCGUAAUGCGAAGGuCGUAGGUUCGACUCCUAUUAUCGGCA 262943
                              ************************************************************************* PP

>>

RNAfold
>gi_545778205_gb_U000_388
CCGAUAUAGCUCAGUUGGUAGAGCAGCGCAUUCGUAAUGCGAAGGUCGUA
GGUUCGACUCCUAUUAUCGGCA
((((((..((((........))))..((((((...))))))..(((((......))))).....)))))).. (-21.80)

Length sequence

: 72

Length match:

71