gi_545778205_gb_U000_395

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

61.6

E-value:

6.4e-13

From sequence:

2818645

To sequence:

2818556

Alignments:

                                                                                                                 NC
                               (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,..................,.,<<<<<_______>> CS
               RF00005       1 GgagauaUAGCucAgUGGU..AgaGCgucgGaCUuaaAAuCcgaag..................g.cgcgGGUUCgAaUCC 60     
                               GG:GA::U+GC::AG GG   A::GCG:::::CU+ +AA:::::+                     C::GGGUUCGAAUCC
  gi_545778205_gb_U000 2818645 GGUGAGGUGGCCGAGAGGCugAAGGCGCUCCCCUGCUAAGGGAGU-augcggucaaaagcugca-uCCGGGGUUCGAAUCC 2818567
                               ****************7777*************************.8****************6.4*************** PP

                                           NC
                               >>>))))))): CS
               RF00005      61 cgcuaucucCa 71     
                               C::::UC:CC+
  gi_545778205_gb_U000 2818566 CCGCCUCACCG 2818556
                               *********** PP

>>

RNAfold
>gi_545778205_gb_U000_395
GGUGAGGCGGGGAUUCGAACCCCGGAUGCAGCUUUUGACCGCAUACUCCC
UUAGCAGGGGAGCGCCUUCAGCCUCUCGGCCACCUCACC
((((((((((((.......))))).((((.((....).).)))).(((((((...)))))))........(((....)))..))))))) (-37.00)

Length sequence

: 89

Length match:

88