gi_545778205_gb_U000_399

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

44.2

E-value:

4.7e-08

From sequence:

297178

To sequence:

297251

Alignments:

                                 v v                                                             v v     NC
                              (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,.,<<<<<_______>>>>>))))))): CS
               RF00005      1 GgagauaUAGCucAgU.GGU.AgaGCgucgGaCUuaaAAuCcgaagg.cgcgGGUUCgAaUCCcgcuaucucCa 71    
                              G:  A  UAG:U:A+   G   :A:C+UCG:A+U  +AAU:CGAAGG C:::GGUUCGA UCC:::  U  :CA
  gi_545778205_gb_U000 297178 GCUCAAGUAGUUAAAAaUGCaUUAACAUCGCAUUCGUAAUGCGAAGGuCGUAGGUUCGACUCCUAUUAUCGGCA 297251
                              **************98766678**************************************************** PP

>>

RNAfold
>gi_545778205_gb_U000_399
CUCAAGUAGUUAAAAAUGCAUUAACAUCGCAUUCGUAAUGCGAAGGUCGU
AGGUUCGACUCCUAUUAUCGGCA
........(((((.......))))).(((((((...)))))))..((((((((.......))))....)))). (-13.80)

Length sequence

: 73

Length match:

72