gi_545778205_gb_U000_404

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

54.2

E-value:

7.8e-11

From sequence:

3322158

To sequence:

3322075

Alignments:

                                                                                                                 NC
                               (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,.............,,<<<<<_______>>>>>))) CS
               RF00005       1 GgagauaUAGCucAgU.GGU.AgaGCgucgGaCUuaaAAuCcgaag.............gcgcgGGUUCgAaUCCcgcuau 66     
                               :::GA::U+G:::A+U GGU  :::CG:::::+U+A   :::::+               +:CGGGUUC+A UCCCG:::U
  gi_545778205_gb_U000 3322158 GCCGAGGUGGUGGAAUuGGUaGACACGCUACCUUGAGGUGGUAGU-gcccaauagggcu-UACGGGUUCAAGUCCCGUCCU 3322080
                               *********************************************.8**********95.********************* PP

                                     NC
                               )))): CS
               RF00005      67 cucCa 71     
                               C:::A
  gi_545778205_gb_U000 3322079 CGGUA 3322075
                               ***** PP

>>

RNAfold
>gi_545778205_gb_U000_404
ACCGAGGACGGGACUUGAACCCGUAAGCCCUAUUGGGCACUACCACCUCA
AGGUAGCGUGUCUACCAAUUCCACCACCUCGGC
.(((((((((((.......)))))..((((....)))).(((((.......))))).(((...........)))..)))))). (-31.20)

Length sequence

: 83

Length match:

82