gi_545778205_gb_U000_409

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

40.1

E-value:

6.7e-07

From sequence:

3836223

To sequence:

3836312

Alignments:

                                                                                                                 NC
                               (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,...................,,<<<<<_______>>> CS
               RF00005       1 GgagauaUAGCucAgUGGU.AgaGCgucgGaCUuaaAAuCcgaag...................gcgcgGGUUCgAaUCCc 61     
                               G:AGAU   :: C   GGU AG ::G::GGACUU AAAUCC::+                    G :C:GGUUCGA UCC:
  gi_545778205_gb_U000 3836223 GAAGAUCGUCGUCUCCGGUgAGGCGGCUGGACUUCAAAUCCAGU-uggggccgccagcggucccGGGCAGGUUCGACUCCU 3836302
                               ********************************************.9*****************95**************** PP

                                          NC
                               >>))))))): CS
               RF00005      62 gcuaucucCa 71     
                               G: AUCU:C 
  gi_545778205_gb_U000 3836303 GUGAUCUUCC 3836312
                               ********** PP

>>

RNAfold
>gi_545778205_gb_U000_409
AAGAUCGUCGUCUCCGGUGAGGCGGCUGGACUUCAAAUCCAGUUGGGGCC
GCCAGCGGUCCCGGGCAGGUUCGACUCCUGUGAUCUUCC
((((((..((((((....))))))((((((.......))))))((((((((....)))))))).(((((.......))))))))))).. (-38.60)

Length sequence

: 89

Length match:

88