gi_545778205_gb_U000_41

cmsearch-Rfam

Family :

cspA

Id:

RF01766

Type:

Cis-reg; thermoregulator;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

GO:0040040 thermosensory behavior

Description:

not description

Score:

493.4

E-value:

9.6e-138

From sequence:

3719889

To sequence:

3720316

Alignments:

                                                                                                                 NC
                               :::<<<<<<_____>>>>>>,,,,,[[-[[[[------[[--[[[[[[[[-----[[[[-[[[[[[-[[[,,,(((((((- CS
               RF01766       1 auCgGucugaagUAcagaCcAuuaAaGcAGuguagUaAggcaaguCCcuuuaAGaguuaUCguuGAUACCccUCguaguGa 81     
                               A+CGGU:UGA GUACA:ACCAUUAAAGCAGUGUAGUAAGGCAAGUCCCUU+AAGAGUUAUCGUUGAUACCCCUCGUAGUG 
  gi_545778205_gb_U000 3719889 AACGGUUUGACGUACAGACCAUUAAAGCAGUGUAGUAAGGCAAGUCCCUUCAAGAGUUAUCGUUGAUACCCCUCGUAGUGC 3719969
                               ********************************************************************************* PP

                                                                                                                 NC
                               -----(((((((,<<<<___________>>>>,,,,,,,,,,<<<____>>>,,,,,,,,,,,)))))))-----)))))) CS
               RF01766      82 acaUUcCuUuaaagcuccaAaAUcUguAgagcAagCCauaacGCCgaaaGGCAaaauuaaUuauuaAaGguAAUaCacuau 162    
                               ACAUUCCUUUAA+GCU:CAAAAUCUGUA:AGCA GCCAUA+CGCCGAAAGGCA+A+UUAAUUAUUAAAGGUAAUACACUAU
  gi_545778205_gb_U000 3719970 ACAUUCCUUUAACGCUUCAAAAUCUGUAAAGCACGCCAUAUCGCCGAAAGGCACACUUAAUUAUUAAAGGUAAUACACUAU 3720050
                               ********************************************************************************* PP

                                                                                                                 NC
                               ),<<<<<______>>>>>,,,,,,,,,,,]]]]]]]]]-]]]]-]]]]----]]]]]]--]]]]-]],,((((((,,,,,, CS
               RF01766     163 GUCcaguAaAAUGacugGUauaGUAAAAUGGUUCaacGaugacAaagGcUUcGgcuucAUcaCUCCuGacgAugGCagcAA 243    
                               GUCC:GUAAAAUGAC:GGUAU GUAAAAUGGUUCAACG+UGACAAAGGCUUCGGCUUCAUCACUCCUGACGAUGGC+++AA
  gi_545778205_gb_U000 3720051 GUCCGGUAAAAUGACUGGUAUCGUAAAAUGGUUCAACGCUGACAAAGGCUUCGGCUUCAUCACUCCUGACGAUGGCUCUAA 3720131
                               ********************************************************************************* PP

                                                                                                                 NC
                               ,<<_____>>,,<<<<<<-<<<<<<-<<<<<<--<<<________>>>>>>>>>---->>->>>>>>>>>>,,,,,,)))) CS
               RF01766     244 AGAcGUgUUCGUacACuUCuCUGCcAucCAggaCGauGGuUuCAAauCccUGgacGAAgGuCAGaAaGUguacUUCaCcaU 324    
                               AGA+GUGUUCGUACACUUCUCUGC:AUCCAG:ACGAUGGUU+CAAAUC:CUGGACGAA:GUCAGAAAGUGU+CUUCACCAU
  gi_545778205_gb_U000 3720132 AGAUGUGUUCGUACACUUCUCUGCUAUCCAGAACGAUGGUUACAAAUCUCUGGACGAAGGUCAGAAAGUGUCCUUCACCAU 3720212
                               ********************************************************************************* PP

                                                                                                                 NC
                               )),,,,<<<-<<<___>>>>>><<<<<<<<<______>>>>>->>>>,,<<<-<<<<____>>>>->>>,,,,<<<<<<<< CS
               RF01766     325 cgAAAacGGcGCcAAAgGCCCggcaGCugcuAACGUaagcaGcCuguAAucuucGcuuaaaagCgcagaAUuuaaaacccc 405    
                               CGAAA+CGGCGC:AAA:GCCCGGCAGCUG:UAACGUAA:CAGCCUGUAAUCU :GCUUAAAAGC:CAGAAU+UAA:A:CCC
  gi_545778205_gb_U000 3720213 CGAAAGCGGCGCUAAAGGCCCGGCAGCUGGUAACGUAACCAGCCUGUAAUCUCUGCUUAAAAGCACAGAAUCUAAGAUCCC 3720293
                               ********************************************************************************* PP

                                                       NC
                               <<<<____>>>>>>>>>>>>::: CS
               RF01766     406 cgccaauUggcggggguuuuuuu 428    
                               :GCCA+UUGGC:GGG:U:UUUUU
  gi_545778205_gb_U000 3720294 UGCCAUUUGGCGGGGAUUUUUUU 3720316
                               *********************** PP

>>

RNAfold
>gi_545778205_gb_U000_41
ACGGUUUGACGUACAGACCAUUAAAGCAGUGUAGUAAGGCAAGUCCCUUC
AAGAGUUAUCGUUGAUACCCCUCGUAGUGCACAUUCCUUUAACGCUUCAA
AAUCUGUAAAGCACGCCAUAUCGCCGAAAGGCACACUUAAUUAUUAAAGG
UAAUACACUAUGUCCGGUAAAAUGACUGGUAUCGUAAAAUGGUUCAACGC
UGACAAAGGCUUCGGCUUCAUCACUCCUGACGAUGGCUCUAAAGAUGUGU
UCGUACACUUCUCUGCUAUCCAGAACGAUGGUUACAAAUCUCUGGACGAA
GGUCAGAAAGUGUCCUUCACCAUCGAAAGCGGCGCUAAAGGCCCGGCAGC
UGGUAACGUAACCAGCCUGUAAUCUCUGCUUAAAAGCACAGAAUCUAAGA
UCCCUGCCAUUUGGCGGGGAUUUUUUU
..((((((.....))))))....((((((.(....((((......)))).....((((.((((((.(((...(((((((...((((((((((.((((...........))))..........(((....)))...........))))))).))).))))))).(((((......)))))...........))))))))).))))..((((....))))........((..((((((......(((.((((....)))).)))......((((((..(((........))))))))).(((((.((.....)).))))).))))))..))(((.(((...))))))(((((((((......))))).))))...).))))))...............((((((((((((....))))))))))))... (-123.50)

Length sequence

: 427

Length match:

426