gi_545778205_gb_U000_418

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

61.7

E-value:

6.3e-13

From sequence:

4037260

To sequence:

4037332

Alignments:

                                                                                                         NC
                               (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,.,<<<<<_______>>>>>))))))): CS
               RF00005       1 GgagauaUAGCucAgU.GGUAgaGCgucgGaCUuaaAAuCcgaagg.cgcgGGUUCgAaUCCcgcuaucucCa 71     
                               GG G:UAUAGCUCAG  GG AGAGCG:C:G:+UU  A :C:G:AGG C ::GGUUCGA  CC:: UA:C CCA
  gi_545778205_gb_U000 4037260 GGGGCUAUAGCUCAGCuGGGAGAGCGCCUGCUUUGCACGCAGGAGGuCUGCGGUUCGAUCCCGCAUAGCUCCA 4037332
                               ****************9555***************************************************** PP

>>

RNAfold
>gi_545778205_gb_U000_418
GGGCUAUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAGGUCUGC
GGUUCGAUCCCGCAUAGCUCCA
(((((((.(((((((((..(((.(.(((((.......))))).).))).))))).))....))))))))).. (-27.20)

Length sequence

: 72

Length match:

71