gi_545778205_gb_U000_429

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

61.2

E-value:

8.7e-13

From sequence:

4496405

To sequence:

4496486

Alignments:

                                                                                                                 NC
                               (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,..........,,<<<<<_______>>>>>)))))) CS
               RF00005       1 GgagauaUAGCucAgU.GGU.AgaGCgucgGaCUuaaAAuCcgaag..........gcgcgGGUUCgAaUCCcgcuaucuc 69     
                               G::GA::U+GC::A+U GGU  ::GC+:::GA+U AAAAUC:::            G+GC:GGUUCGA UCC:GC::UC::
  gi_545778205_gb_U000 4496405 GCCGAAGUGGCGAAAUcGGUaGACGCAGUUGAUUCAAAAUCAACC-guagaaauacGUGCCGGUUCGAGUCCGGCCUUCGG 4496484
                               *********************************************.8********95************************ PP

                                  NC
                               ): CS
               RF00005      70 Ca 71     
                               CA
  gi_545778205_gb_U000 4496485 CA 4496486
                               ** PP

>>

RNAfold
>gi_545778205_gb_U000_429
CCGAAGUGGCGAAAUCGGUAGACGCAGUUGAUUCAAAAUCAACCGUAGAA
AUACGUGCCGGUUCGAGUCCGGCCUUCGGCA
((((((..(((...((....))))).(((((((...)))))))((((....)))).(((((.......))))))))))).. (-27.20)

Length sequence

: 81

Length match:

80