gi_545778205_gb_U000_43

cmsearch-Rfam

Family :

cspA

Id:

RF01766

Type:

Cis-reg; thermoregulator;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

GO:0040040 thermosensory behavior

Description:

not description

Score:

42.0

E-value:

6.5e-09

From sequence:

922695

To sequence:

922302

Alignments:

                                  vv           vv          v                  v      vv v v   v  v            v   NC
                              :::<<<<<<_____>>>>>>,,,,,[[-[[[[------[[--[[[[[[[[-----[[[[-[[[[[[-[[[,,,~~~~~~,<<< CS
               RF01766      1 auCgGucugaagUAcagaCcAuuaAaGcAGuguagUaAggcaaguCCcuuuaAGaguuaUCguuGAUACCccU*[90]*UCca 167   
                               UC:  :::++GUA:::  :   +  GC:  G  +U+ G:+ A :CCC U+      :   GUU AU CC++           
  gi_545778205_gb_U000 922695 UUCUCUAAAUUGUAUUUCUAGAGUUGGCGAGG--UUUUGAACAGCCCCCUCUCUGACCCCGGUUUAUUCCAUC*[44]*---- 922581
                              ****9999999999886655555555565555..4666999999998888766555555579*******9765...7...... PP

                                          v             v v   v v vv  v                v          v               NC
                              <<______>>>>>,,,,,,,,,,,]]]]]]]]]-]]]]-]]]]----]]]]]]--]]]]-]],,((((((,,,,,,,<<____ CS
               RF01766    168 guAaAAUGacugGUauaGUAAAAUGGUUCaacGaugacAaagGcUUcGgcuucAUcaCUCCuGacgAugGCagcAAAGAcGUg 250   
                                          GUA  GU AA UGG U AAC A :  AA GG UU+G: U:CAUC  :CC GA:: : GC GC AAGA+ U 
  gi_545778205_gb_U000 922580 ------------GUACUGUUAAGUGGUUCAACAAUGCCAAAGGGUUUGGUUUCAUCUGCCCUGAAGGCGGCGGCGAAGAUAUU 922510
                              ............58899****************************************************************** PP

                                   vv   v      v      v   v          v v         v      v   vv       v            NC
                              _>>,,<<<<<<-<<<<<<-<<<<<<--<<<________>>>>>>>>>---->>->>>>>>>>>>,,,,,,)))))),,,,    CS
               RF01766    251 UUCGUacACuUCuCUGCcAucCAggaCGauGGuUuCAAauCccUGgacGAAgGuCAGaAaGUguacUUCaCcaUcgAAAa    330   
                              UUCG   A:U  UC::C AU::AG   G UGGUU+CA A C CU::A     G+::GA A:U       +C : :: A +
  gi_545778205_gb_U000 922509 UUCGCUCAUUAUUCCACCAUUCAGAUGGAUGGUUACAGAACGCUAAA----AGCUGGACAAUCCGU---UCAGUUUGAUG    922437
                              *********************************************99....677777777765443...36666666555    PP

                                             vv vv        vv vv                                      NC
                              ~~~~~~~~~~~~,,<<<-<<<<____>>>>->>>,,,,<<<<<<<<<<<<____.>>>>>>>>>>>>::: CS
               RF01766    331 *[16]**[25]*AAucuucGcuuaaaagCgcagaAUuuaaaacccccgccaauU.ggcggggguuuuuuu 428   
                                            U     ::U  A::  C  AA   AAAA::CC:GCC  +U GGC:GG::UUUUU U
  gi_545778205_gb_U000 922436 *[42]**[35]*UGUCUCAUUGUGUACAUCCUAAAGGCAAAAUGCCAGCCCGAUcGGCUGGCAUUUUUAU 922302
                              ...7.....6..33333333444444556667888999************99999*************** PP

RNAfold
>gi_545778205_gb_U000_43
GAGAGUAAUUUUUGAGAUAAAAAUGCCAGCCGAUCGGGCUGGCAUUUUGC
CUUUAGGAUGUACACAAUGAGACAGAAGAGCUAUGCGACUGCCGCUUCUA
CUUCGACGGGCACAAUAACACUGGCGUGAUUGCCUUUUGGCCCCUGGUGG
ACAUCAAACUGAACGGAUUGUCCAGCUUUUAGCGUUCUGUAACCAUCCAU
CUGAAUGGUGGAAUAAUGAGCGAAAAUAUCUUCGCCGCCGCCUUCAGGGC
AGAUGAAACCAAACCCUUUGGCAUUGUUGAACCACUUAACAGUACCCUUU
UCCAUGCUUCGACAUCCUUCGCAAAUCUUAUACAAGUAAGAUGGAAUAAA
CCGGGGUCAGAGAGGGGGCUGUUCAAAACCUCGCCAACUCUAGAAAUACA
AUUUAGAGAAUUAGGGCGAGCCGUCAA
....(((..(((((((...((((((((((((.....))))))))))))...)))))))..)))((((((..((((((..((((.(((.....)))............((((.(((.......((((....))))..)))))))..(.((((((((..........)).)))))).)...)))).))))))...((((..((((((.(((((.....((.(((((......))))))))))))))))))...))))...(((((...)))))))))))..........((((((.((((((((...((((((......(((.((..((((((....))))))))))).....))))))..))))))))))))))......((((((..(((((((.......)))))))......))))))....... (-130.80)

Length sequence

: 427

Length match:

392