gi_545778205_gb_U000_432

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

49.9

E-value:

1.2e-09

From sequence:

4606401

To sequence:

4606318

Alignments:

                                   v                                                                          v  NC
                               (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,............,,<<<<<_______>>>>>)))) CS
               RF00005       1 GgagauaUAGCucAgU.GGU.AgaGCgucgGaCUuaaAAuCcgaag............gcgcgGGUUCgAaUCCcgcuauc 67     
                               G::: ::U+GC::A+U GGU  ::GCG::: :+U A   : :::+             G+G:GGGUUC+A UCCC:C:: :
  gi_545778205_gb_U000 4606401 GCGAAGGUGGCGGAAUuGGUaGACGCGCUAGCUUCAGGUGUUAGU-guccuuacggacGUGGGGGUUCAAGUCCCCCCCCU 4606322
                               *********************************************.8**********95********************** PP

                                    NC
                               ))): CS
               RF00005      68 ucCa 71     
                               ::CA
  gi_545778205_gb_U000 4606321 CGCA 4606318
                               **** PP

>>

RNAfold
>gi_545778205_gb_U000_432
GCGAGGGGGGGGACUUGAACCCCCACGUCCGUAAGGACACUAACACCUGA
AGCUAGCGCGUCUACCAAUUCCGCCACCUUCGC
((((((((((((.......)))))..((((....)))).................(((.(..........))))..))))))) (-27.40)

Length sequence

: 83

Length match:

82