gi_545778205_gb_U000_439

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

58.5

E-value:

4.8e-12

From sequence:

697047

To sequence:

696966

Alignments:

                                                                                                                  NC
                              (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,..........,,<<<<<_______>>>>>))))))): CS
               RF00005      1 GgagauaUAGCucAgU.GGU.AgaGCgucgGaCUuaaAAuCcgaag..........gcgcgGGUUCgAaUCCcgcuaucucCa 71    
                              G::G:::U+GC::A+U GGU  ::GC+:C:GA+UUA   UC:G:            G+GCG:GUUC+A UC:CGC:::C::CA
  gi_545778205_gb_U000 697047 GCGGGAGUGGCGAAAUuGGUaGACGCACCAGAUUUAGGUUCUGGC-gccgcaagguGUGCGAGUUCAAGUCUCGCCUCCCGCA 696966
                              *********************************************.8********85************************** PP

>>

RNAfold
>gi_545778205_gb_U000_439
GCGGGAGGCGAGACUUGAACUCGCACACCUUGCGGCGCCAGAACCUAAAU
CUGGUGCGUCUACCAAUUUCGCCACUCCCGC
(((((((((((((.(((....((((.....))))((((((((.......))))))))......))))))))))..)))))) (-35.90)

Length sequence

: 81

Length match:

80