gi_545778205_gb_U000_448

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

59.9

E-value:

1.9e-12

From sequence:

925971

To sequence:

925887

Alignments:

                                                                                                                  NC
                              (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,.............,.,<<<<<_______>>>>>)))) CS
               RF00005      1 GgagauaUAGCucAgUGGU..AgaGCgucgGaCUuaaAAuCcgaag.............g.cgcgGGUUCgAaUCCcgcuauc 67    
                              GG:GA::U+ C::AGUGG   A::G G::: :CU+ AAA: :::+                CG:GGGUUCGAAUCCC:C::UC
  gi_545778205_gb_U000 925971 GGUGAGGUGUCCGAGUGGCugAAGGAGCACGCCUGGAAAGUGUGU-auacggcaacgua-uCGGGGGUUCGAAUCCCCCCCUC 925891
                              ****************7777*************************.8***********6.4********************** PP

                                   NC
                              ))): CS
               RF00005     68 ucCa 71    
                              :CC+
  gi_545778205_gb_U000 925890 ACCG 925887
                              **** PP

>>

RNAfold
>gi_545778205_gb_U000_448
GGUGAGGGGGGGAUUCGAACCCCCGAUACGUUGCCGUAUACACACUUUCC
AGGCGUGCUCCUUCAGCCACUCGGACACCUCACC
((((((((((((.......))))).(((((....)))))........(((.((.(.(((.....)))).)).)))..))))))) (-29.90)

Length sequence

: 84

Length match:

83