gi_545778205_gb_U000_449

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

26.4

E-value:

0.0046

From sequence:

586007

To sequence:

586090

Alignments:

                                               v               v                                                  NC
                              ,<<<<_______>>>>,<<<<<_______>>>>>,,..............................,.,<<<<<_______>> CS
               RF00005      9 AGCucAgUGGUAgaGCgucgGaCUuaaAAuCcgaag..............................g.cgcgGGUUCgAaUCC 60    
                              AGC:CAG G U G:GCG ::::+U+++ A:::: A                                 CGC:GGUUCGAAUCC
  gi_545778205_gb_U000 586007 AGCGCAGAGAUGGCGCGGUAAGUUGUUGACUUAAA-augucguucuaggaacuucuaagucguggg-cCGCAGGUUCGAAUCC 586087
                              *******99999***********************.8****************************5.5*************** PP

                                  NC
                              >>> CS
               RF00005     61 cgc 63    
                              :GC
  gi_545778205_gb_U000 586088 UGC 586090
                              *** PP

RNAfold
>gi_545778205_gb_U000_449
GCGCAGAGAUGGCGCGGUAAGUUGUUGACUUAAAAUGUCGUUCUAGGAAC
UUCUAAGUCGUGGGCCGCAGGUUCGAAUCCUGC
((((.......))))(((.......(((((((.....((.......)).....)))))))...)))(((((.......))))) (-20.70)

Length sequence

: 83

Length match:

82