gi_545778205_gb_U000_450

cmsearch-Rfam

Family :

tRNA-Sec

Id:

RF01852

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

not description

Score:

35.0

E-value:

5.8e-05

From sequence:

1031712

To sequence:

1031629

Alignments:

                                             vv       vv   v                 v v                v                NC
                               (((((((((,,<<<<<<____>.>>>>><<<<<<_______>>>>>>,<<<<<________>>>>>,,<<<<_______>> CS
               RF01852       1 GggggggcgaucggcccUGGUg.ggccguccGGgCUUCAAAcCCggaGggggcuagcaacggccccgGggGGUUCGAUUCC 80     
                               GG::G G    :::    GGU    ::: CCGG:CUU AAA:CCGG G :::C A +    G:::+  :G:GUUCGA UC:
  gi_545778205_gb_U000 1031712 GGAAGUGU--GGCCGAGCGGUUgAAGGCACCGGUCUUGAAAACCGGCG-ACCCGAAA----GGGUUCCAGAGUUCGAAUCU 1031639
                               *******8..79*9886666652679********************98.55555555....5555457************* PP

                                           NC
                               >>))))))))) CS
               RF01852      81 cccgccccccC 91     
                               C:  C C::CC
  gi_545778205_gb_U000 1031638 CU-GCGCUUCC 1031629
                               *9.9******* PP

>>

RNAfold
>gi_545778205_gb_U000_450
GGCGGAAGCGCAGAGAUUCGAACUCUGGAACCCUUUCGGGUCGCCGGUUU
UCAAGACCGGUGCCUUCAACCGCUCGGCCACACUUCCGGAA
(((.((.((((((((.......)))))..((((....))))(((((((((...)))))))))........))))).)))............ (-34.10)

Length sequence

: 91

Length match:

82