gi_545778205_gb_U000_451

cmsearch-Rfam

Family :

tRNA-Sec

Id:

RF01852

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

not description

Score:

28.0

E-value:

0.0039

From sequence:

1097652

To sequence:

1097569

Alignments:

                                      v      vv      vv                                                          NC
                               (((((((((,,<<<<<<____>>>.>>><<<<<<_______>>>>>>,<<<<<________>>>>>,,<<<<_______>> CS
               RF01852       1 GggggggcgaucggcccUGGUggg.ccguccGGgCUUCAAAcCCggaGggggcuagcaacggccccgGggGGUUCGAUUCC 80     
                               GG:G:GG+G  :::   UGG     ::::C:: :CU  AAA: ::G: :::::   +    ::::: GGGGGUUCGA UCC
  gi_545778205_gb_U000 1097652 GGUGAGGUG--UCCGAGUGGCUGAaGGAGCACGCCUGGAAAGUGUGU-AUACGGCAA----CGUAUCGGGGGUUCGAAUCC 1097579
                               ******987..777667777554415556666666666666666665.788877777....888888************** PP

                                  v        NC
                               >>))))))))) CS
               RF01852      81 cccgccccccC 91     
                               CCC CC:C:CC
  gi_545778205_gb_U000 1097578 CCC-CCUCACC 1097569
                               *97.99***** PP

>>

RNAfold
>gi_545778205_gb_U000_451
GGCGGUGAGGGGGGGAUUCGAACCCCCGAUACGUUGCCGUAUACACACUU
UCCAGGCGUGCUCCUUCAGCCACUCGGACACCUCACCAAAU
...((((((((((((.......))))).(((((....)))))........(((.((.(.(((.....)))).)).)))..))))))).... (-31.00)

Length sequence

: 91

Length match:

82