gi_545778205_gb_U000_452

cmsearch-Rfam

Family :

tRNA-Sec

Id:

RF01852

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

not description

Score:

33.6

E-value:

0.00014

From sequence:

1287329

To sequence:

1287247

Alignments:

                                       v     vv      v v   v                 v v               v                 NC
                               (((((((((,,<<<<<<____>>.>>>><<<<<<_______>>>>>>,<<<<<__~~~~~>>>>>,,<<<<_______>>> CS
               RF01852       1 GggggggcgaucggcccUGGUgg.gccguccGGgCUUCAAAcCCggaGggggcua*[6]*gccccgGggGGUUCGAUUCCc 81     
                                GG:GGG:  UC::  : GG :   ::G :C:G:CU  AAA:C:G: G      A           G::GGUUCGA UCC:
  gi_545778205_gb_U000 1287329 UGGUGGGGU-UCCCGAGCGGCCAaAGGGAGCAGACUGUAAAUCUGCCGU----CA*[6]*----UCGAAGGUUCGAAUCCU 1287257
                               *******76.9999888888886248899******************92....22..2......369************** PP

                                v         NC
                               >))))))))) CS
               RF01852      82 ccgccccccC 91     
                               : :CCC:CC 
  gi_545778205_gb_U000 1287256 UCCCCCACCA 1287247
                               ********** PP

>>

RNAfold
>gi_545778205_gb_U000_452
UGGUGGUGGGGGAAGGAUUCGAACCUUCGAAGUCGAUGACGGCAGAUUUA
CAGUCUGCUCCCUUUGGCCGCUCGGGAACCCCACCAGGGG
...(((((((((((((.......)))))...(((...))).(((((((...)))))))((((...........)))).)))))))).... (-34.20)

Length sequence

: 90

Length match:

81