gi_545778205_gb_U000_453

cmsearch-Rfam

Family :

tRNA-Sec

Id:

RF01852

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

not description

Score:

35.5

E-value:

4.3e-05

From sequence:

1287624

To sequence:

1287540

Alignments:

                                             vv      v v   v                 v v               v                 NC
                               (((((((((,,<<<<<<____>>.>>>><<<<<<_______>>>>>>,<<<<<__~~~~~>>>>>,,<<<<_______>>> CS
               RF01852       1 GggggggcgaucggcccUGGUgg.gccguccGGgCUUCAAAcCCggaGggggcua*[6]*gccccgGggGGUUCGAUUCCc 81     
                               G:GG:GG:G UC::  : GG :   ::G :C:G:CU  AAA:C:G: G      A           G::GGUUCGA UCC:
  gi_545778205_gb_U000 1287624 GUGGUGGGGUUCCCGAGCGGCCAaAGGGAGCAGACUGUAAAUCUGCCGU----CA*[6]*----UCGAAGGUUCGAAUCCU 1287551
                               **************888888886258899******************92....22..2......369************** PP

                                           NC
                               >.))))))))) CS
               RF01852      82 c.cgccccccC 91     
                               : C:CC:CC:C
  gi_545778205_gb_U000 1287550 UcCCCCACCAC 1287540
                               *8999****** PP

>>

RNAfold
>gi_545778205_gb_U000_453
UGGUGGUGGGGGAAGGAUUCGAACCUUCGAAGUCGAUGACGGCAGAUUUA
CAGUCUGCUCCCUUUGGCCGCUCGGGAACCCCACCACGGG
(.((((((((((((((.......)))))...(((...))).(((((((...)))))))((((...........)))).))))))))).). (-37.30)

Length sequence

: 90

Length match:

83