gi_545778205_gb_U000_454

cmsearch-Rfam

Family :

tRNA-Sec

Id:

RF01852

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

not description

Score:

34.0

E-value:

0.0001

From sequence:

1991901

To sequence:

1991819

Alignments:

                                      v       vv      vv   v                 v vv              vv                NC
                               (((((((((,,<<<.<<<____>>>>>><<<<<<_______>>>>>>,<<<<<________>>>>>,,<<<<_______>> CS
               RF01852       1 Gggggggcgaucgg.cccUGGUgggccguccGGgCUUCAAAcCCggaGggggcuagcaacggccccgGggGGUUCGAUUCC 80     
                                :::GG:+G  ::G   : GGU:  C:: ::GG: UU AAA:CC:: G  G::U       ::C   G:GGGUUC+A UCC
  gi_545778205_gb_U000 1991901 GCCCGGAUG--GUGgAAUCGGUAGACACAAGGGAUUUAAAAUCCCUCG--GCGUUCG----CGCUGUGCGGGUUCAAGUCC 1991829
                               *******97..7773559***************************655..7777766....777777************** PP

                                  v        NC
                               >>))))))))) CS
               RF01852      81 cccgccccccC 91     
                               C:C :CC::: 
  gi_545778205_gb_U000 1991828 CGC-UCCGGGU 1991819
                               **8.9****** PP

>>

RNAfold
>gi_545778205_gb_U000_454
GGUACCCGGAGCGGGACUUGAACCCGCACAGCGCGAACGCCGAGGGAUUU
UAAAUCCCUUGUGUCUACCGAUUCCACCAUCCGGGCUCGG
....(((((((((((.......)))))...(((....)))(((((((((...))))))))).(((....))).......))))))..... (-33.80)

Length sequence

: 90

Length match:

81