gi_545778205_gb_U000_455

cmsearch-Rfam

Family :

tRNA-Sec

Id:

RF01852

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

not description

Score:

34.1

E-value:

0.0001

From sequence:

1991988

To sequence:

1991917

Alignments:

                               v             v v    v v   v                 v                                v NC
                               (((((((((,,<<<<<<____>>>>>><<<<<<_______>>>>>>,~~~~~~,,<<<<_______>>>>))))))))) CS
               RF01852       1 GggggggcgaucggcccUGGUgggccguccGGgCUUCAAAcCCggaG*[18]*gGggGGUUCGAUUCCcccgccccccC 91     
                                GG:G:G::  ::: :  GGU : ::: :CGG: U CAAA:CCG:        G ::GGUUCGA UCC::::C:C:CC 
  gi_545778205_gb_U000 1991988 UGGCGCGUU-AACAAAGCGGU-UAUGUAGCGGAUUGCAAAUCCGUCU*[ 1]*GUCCGGUUCGACUCCGGAACGCGCCU 1991917
                               ********9.69**999***7.678*******************987...4..56************************ PP

>>

RNAfold
>gi_545778205_gb_U000_455
AGAAAGUGGAGGCGCGUUCCGGAGUCGAACCGGACUAGACGGAUUUGCAA
UCCGCUACAUAACCGCUUUGUUAACGCGCCAAAUUCUUCAG
.((((((...((((((((((((.......))))).(((.((((((...)))))))))..((((......)))))))))))..))).))).. (-27.40)

Length sequence

: 91

Length match:

70