gi_545778205_gb_U000_456

cmsearch-Rfam

Family :

tRNA-Sec

Id:

RF01852

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

not description

Score:

44.5

E-value:

2e-07

From sequence:

2043558

To sequence:

2043471

Alignments:

                                       v   v vv      vv v v                 v                                    NC
                               (((((((((,,<<<<<<____>>>>>><<<<<<_______>>>>>>,<<<<<________>>>>>,.,<<<<_______>> CS
               RF01852       1 GggggggcgaucggcccUGGUgggccguccGGgCUUCAAAcCCggaGggggcuagcaacggccccg.GggGGUUCGAUUCC 80     
                                GG:G:G:   C G  C G UG  C G CCGG:CU  AAA:CCGG G::G::   +    ::C::  GGGGGUUC+A UCC
  gi_545778205_gb_U000 2043558 CGGAGAGAUGCCGGAGCGGCUGAACGGACCGGUCUCGAAAACCGGAGUAGGGGCAA----CUCUACcGGGGGUUCAAAUCC 2043482
                               ********9877778899999999***********************999999888....9999999************** PP

                                 v         NC
                               >>))))))))) CS
               RF01852      81 cccgccccccC 91     
                               CC :C:C:CC 
  gi_545778205_gb_U000 2043481 CCCUCUCUCCG 2043471
                               *********** PP

>>

RNAfold
>gi_545778205_gb_U000_456
GCGGAGAGAGGGGGAUUUGAACCCCCGGUAGAGUUGCCCCUACUCCGGUU
UUCGAGACCGGUCCGUUCAGCCGCUCCGGCAUCUCUCCGUU
((((((((((((((.......)))))(((((........)))))(((((((...)))))))........((((...)))).))))))))). (-42.20)

Length sequence

: 91

Length match:

86