gi_545778205_gb_U000_461

cmsearch-Rfam

Family :

tRNA-Sec

Id:

RF01852

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

not description

Score:

30.4

E-value:

0.00095

From sequence:

2818275

To sequence:

2818201

Alignments:

                                       v      v       v    v                 v                        v         NC
                               (((((((((,,<<<<<<.____>>>>>><<<<<<_______>>>>>>,~~~~~~,,<<<<_______>>>>))))))))) CS
               RF01852       1 Gggggggcgaucggccc.UGGUgggccguccGGgCUUCAAAcCCggaG*[18]*gGggGGUUCGAUUCCcccgccccccC 91     
                                G::::::    ::C   UGG   G::  C::GGCU C AACC::G G       GG:GGUUCGA UCC:C ::::::C 
  gi_545778205_gb_U000 2818275 UGCAUCCGU-AGCUCAGcUGGAUAGAGUACUCGGCUACGAACCGAGCG*[ 2]*CGGAGGUUCGAAUCCUCCCGGAUGCA 2818201
                               *******77.7****988999999************************...4..57************************ PP

>>

RNAfold
>gi_545778205_gb_U000_461
GAGAUGGUGCAUCCGGGAGGAUUCGAACCUCCGACCGCUCGGUUCGUAGC
CGAGUACUCUAUCCAGCUGAGCUACGGAUGCAUCGGGAAA
....((((((((((((((((.......)))))....((((((((...)))))))).(((.........)))...)))))))))))..... (-36.70)

Length sequence

: 90

Length match:

73