gi_545778205_gb_U000_462

cmsearch-Rfam

Family :

tRNA-Sec

Id:

RF01852

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

not description

Score:

30.0

E-value:

0.0012

From sequence:

2818647

To sequence:

2818555

Alignments:

                                             vvv       vvv                                                       NC
                               (((((((((,,<<<<<<__~~~~~>>>>>><<<<<<_______>>>>>>,<<<<<________>>>>>,.,<<<<______ CS
               RF01852       1 GggggggcgaucggcccUG*[2]*gggccguccGGgCUUCAAAcCCggaGggggcuagcaacggccccg.GggGGUUCGAU 77     
                               G GG:G::G  ::: +  G        ::::C:: :CU C AA: ::G: :G:::U  +A +G:::C:   GGGGUUCGA 
  gi_545778205_gb_U000 2818647 GUGGUGAGGUGGCCGAGAG*[5]*--AGGCGCUCCCCUGCUAAGGGAGUAUGCGGUCAAA-AGCUGCAUcCGGGGUUCGAA 2818570
                               ************9965555..5....59**********************9999998775.77999999878999****** PP

                                               NC
                               _>>>>.))))))))) CS
               RF01852      78 UCCcc.cgccccccC 91     
                               UCCCC C::C:CC C
  gi_545778205_gb_U000 2818569 UCCCCgCCUCACCGC 2818555
                               *99988********* PP

>>

RNAfold
>gi_545778205_gb_U000_462
CGGUGAGGCGGGGAUUCGAACCCCGGAUGCAGCUUUUGACCGCAUACUCC
CUUAGCAGGGGAGCGCCUUCAGCCUCUCGGCCACCUCACCAC
.((((((((((((.......))))).((((.((....).).)))).(((((((...)))))))........(((....)))..))))))).. (-38.10)

Length sequence

: 92

Length match:

91