gi_545778205_gb_U000_468

cmsearch-Rfam

Family :

tRNA-Sec

Id:

RF01852

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

not description

Score:

27.0

E-value:

0.0069

From sequence:

3318288

To sequence:

3318218

Alignments:

                                     vv    v   v    v   v v                 v                           vv       NC
                               (((((((((,,<<<<<<____>>>>>><<<<<<_______>>>>>>,<~~~~~~>,,<<<<_______>>>>))))))))) CS
               RF01852       1 GggggggcgaucggcccUGGUgggccguccGGgCUUCAAAcCCggaGg*[16]*cgGggGGUUCGAUUCCcccgccccccC 91     
                               G:GGGG+ G  : ::C UGGU G:: : :CGGGCU   AACCCG: G:      : G :GGUUC+A UCC: C  CCCC:C
  gi_545778205_gb_U000 3318288 GCGGGGUGG-AGCAGCCUGGUAGCU-CGUCGGGCUCAUAACCCGAAGA*[ 0]*UCGUCGGUUCAAAUCCGGC--CCCCGC 3318218
                               *****9666.57788899***8887.899******999*******995......589***************9..79**** PP

>>

RNAfold
>gi_545778205_gb_U000_468
AAAGUGGUUGCGGGGGCCGGAUUUGAACCGACGAUCUUCGGGUUAUGAGC
CCGACGAGCUACCAGGCUGCUCCACCCCGCGCCUGAAACG
.....(((.((((((..(((.......))).......(((((((...))))))).((((.........))))..)))))))))....... (-30.30)

Length sequence

: 90

Length match:

69