gi_545778205_gb_U000_469

cmsearch-Rfam

Family :

tRNA-Sec

Id:

RF01852

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

not description

Score:

81.7

E-value:

4.4e-17

From sequence:

3836222

To sequence:

3836312

Alignments:

                                                                                                                 NC
                               (((((((((,,<<<<<<____>>>>>><<<<<<_______>>>>>>,<<<<<________>>>>>,.,<<<<_______>> CS
               RF01852       1 GggggggcgaucggcccUGGUgggccguccGGgCUUCAAAcCCggaGggggcuagcaacggccccg.GggGGUUCGAUUCC 80     
                               GG::G::C: UCG:C:C GGUG:G:CG:C:GG:CUUCAAA:CC:G: GGG:C + CA+CGG:CCCG G::GGUUCGA UCC
  gi_545778205_gb_U000 3836222 GGAAGAUCG-UCGUCUCCGGUGAGGCGGCUGGACUUCAAAUCCAGUUGGGGCCGCCAGCGGUCCCGgGCAGGUUCGACUCC 3836301
                               *********.9********************************************************************** PP

                                           NC
                               >>))))))))) CS
               RF01852      81 cccgccccccC 91     
                               :::G::C::CC
  gi_545778205_gb_U000 3836302 UGUGAUCUUCC 3836312
                               *********** PP

>>

RNAfold
>gi_545778205_gb_U000_469
GAAGAUCGUCGUCUCCGGUGAGGCGGCUGGACUUCAAAUCCAGUUGGGGC
CGCCAGCGGUCCCGGGCAGGUUCGACUCCUGUGAUCUUCC
(((((((..((((((....))))))((((((.......))))))((((((((....)))))))).(((((.......)))))))))))). (-41.40)

Length sequence

: 90

Length match:

89