gi_545778205_gb_U000_470

cmsearch-Rfam

Family :

tRNA-Sec

Id:

RF01852

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

not description

Score:

34.3

E-value:

9e-05

From sequence:

3946957

To sequence:

3947028

Alignments:

                                      v       v      v    v                 v                         v        NC
                               (((((((((,,<<<<<<____>>>>>><<<<<<_______>>>>>>,~~~~~~,,<<<<_______>>>>))))))))) CS
               RF01852       1 GggggggcgaucggcccUGGUgggccguccGGgCUUCAAAcCCggaG*[18]*gGggGGUUCGAUUCCcccgccccccC 91     
                               :GGGG:G    :::C :U G : G::: CCGG:CU CAAA:CCGG         G G:GUUCGA UC:C   C:CCCC:
  gi_545778205_gb_U000 3946957 AGGGGCGU--AGUUCAAUUGGUAGAGCACCGGUCUCCAAAACCGGGU*[ 2]*UGGGAGUUCGAGUCUCU-CCGCCCCU 3947028
                               ******97..69999876666789999*****************976...3..789***********998.79****** PP

>>

RNAfold
>gi_545778205_gb_U000_470
ACCCUAAUUAGGGGCGUAGUUCAAUUGGUAGAGCACCGGUCUCCAAAACC
GGGUGUUGGGAGUUCGAGUCUCUCCGCCCCUGCCAGAAAUC
........((((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))))......... (-28.10)

Length sequence

: 91

Length match:

70