gi_545778205_gb_U000_471

cmsearch-Rfam

Family :

tRNA-Sec

Id:

RF01852

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

not description

Score:

32.9

E-value:

0.00021

From sequence:

3982509

To sequence:

3982582

Alignments:

                                       v      v      v    v                 v                        v         NC
                               (((((((((,,<<<<<<____>>>>>><<<<<<_______>>>>>>,~~~~~~,,<<<<_______>>>>))))))))) CS
               RF01852       1 GggggggcgaucggcccUGGUgggccguccGGgCUUCAAAcCCggaG*[18]*gGggGGUUCGAUUCCcccgccccccC 91     
                               GG:GG:::   :::C  U G   G::: C:GG: U   A :CC:G         G:GGGUUCGA UCCC: :::CC:CC
  gi_545778205_gb_U000 3982509 GGUGGCUAU-AGCUCAGUUGGUAGAGCCCUGGAUUGUGAUUCCAGUU*[ 2]*CGUGGGUUCGAAUCCCAUUAGCCACC 3982582
                               *******88.7999986555557999999999999888889999999...4..57************************ PP

>>

RNAfold
>gi_545778205_gb_U000_471
UUUGUAGUGGUGGCUAUAGCUCAGUUGGUAGAGCCCUGGAUUGUGAUUCC
AGUUGUCGUGGGUUCGAAUCCCAUUAGCCACCCCAUUAUUA
...(((((((((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))))..))))).. (-30.70)

Length sequence

: 91

Length match:

72