gi_545778205_gb_U000_472

cmsearch-Rfam

Family :

tRNA-Sec

Id:

RF01852

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

not description

Score:

27.7

E-value:

0.0045

From sequence:

3982736

To sequence:

3982806

Alignments:

                                     v      v          v  v                 v                          v       NC
                               (((((((((,,<<<<<<____>>>>>><<<<<<_______>>>>>>,~~~~~~,,<<<<_______>>>>))))))))) CS
               RF01852       1 GggggggcgaucggcccUGGUgggccguccGGgCUUCAAAcCCggaG*[18]*gGggGGUUCGAUUCCcccgccccccC 91     
                               GG:G:G+ :  ::+:C:UGGU:G: :: :C:GG UU   ACC:G: G       GG:GGUUCGA UCC:C:  C:C:CC
  gi_545778205_gb_U000 3982736 GGCGAGU-AGCGCAGCUUGGUAGC-GCAACUGGUUUGGGACCAGUGG*[ 2]*CGGAGGUUCGAAUCCUCU--CUCGCC 3982806
                               ****994.335666*********9.5666666666666666666655...4..56***************7..99**** PP

>>

RNAfold
>gi_545778205_gb_U000_472
CAGUAUUUCGGCGAGUAGCGCAGCUUGGUAGCGCAACUGGUUUGGGACCA
GUGGGUCGGAGGUUCGAAUCCUCUCUCGCCGACCAAUUUU
.......((((((((..((((.........)))).(((((((...))))))).....(((((.......)))))))))))))........ (-32.70)

Length sequence

: 90

Length match:

69