gi_545778205_gb_U000_473

cmsearch-Rfam

Family :

tRNA-Sec

Id:

RF01852

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

not description

Score:

32.1

E-value:

0.00033

From sequence:

4175472

To sequence:

4175552

Alignments:

                                      v      vv      v v   v                 v v                   v             NC
                               (((((((((,,<<<<<<____>>.>>>><<<<<<_______>>>>>>,<<<<<______~~~~~>>>>>,,<<<<______ CS
               RF01852       1 GggggggcgaucggcccUGGUgg.gccguccGGgCUUCAAAcCCggaGggggcuagcaa*[2]*gccccgGggGGUUCGAU 77     
                               GG:GGGG   UC::  : GG :   ::G :C:G:CU  AAA:C:G: G     U  CA+         + G::GGUUCGA 
  gi_545778205_gb_U000 4175472 GGUGGGGU--UCCCGAGCGGCCAaAGGGAGCAGACUGUAAAUCUGCCG-----UCACAG*[3]*----UCGAAGGUUCGAA 4175539
                               *****985..9999888888886258899******************9.....333333..2......269********** PP

                                     v        NC
                               _>>>>))))))))) CS
               RF01852      78 UCCcccgccccccC 91     
                               UCC::  CCCC:CC
  gi_545778205_gb_U000 4175540 UCCUU-CCCCCACC 4175552
                               *****.689***** PP

>>

RNAfold
>gi_545778205_gb_U000_473
GUCCGGUGGGGUUCCCGAGCGGCCAAAGGGAGCAGACUGUAAAUCUGCCG
UCACAGACUUCGAAGGUUCGAAUCCUUCCCCCACCACCAA
....(((((((.((((...........))))(((((.......))))).(((...)))...(((((.......))))))))))))..... (-29.80)

Length sequence

: 90

Length match:

79