gi_545778205_gb_U000_474

cmsearch-Rfam

Family :

tRNA-Sec

Id:

RF01852

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

not description

Score:

42.3

E-value:

7.5e-07

From sequence:

4175673

To sequence:

4175743

Alignments:

                                      v      vv      vv   v                 v                         v        NC
                               (((((((((,,<<<<<<____>>>>>><<<<<<_______>>>>>>,~~~~~~,,<<<<_______>>>>))))))))) CS
               RF01852       1 GggggggcgaucggcccUGGUgggccguccGGgCUUCAAAcCCggaG*[18]*gGggGGUUCGAUUCCcccgccccccC 91     
                               G:GGG::    :::  :UGG :  ::: :C:G:CUUC AA:C:G: G       G:GGGUUCGAUUCCC:  ::CCC:C
  gi_545778205_gb_U000 4175673 GCGGGCAU--CGUAUAAUGGCUAUUACCUCAGCCUUCCAAGCUGAUG*[ 1]*UGCGGGUUCGAUUCCCG-CUGCCCGC 4175743
                               ******96..9************************************...4..67***************.79****** PP

>>

RNAfold
>gi_545778205_gb_U000_474
UUCCAGGAUGCGGGCAUCGUAUAAUGGCUAUUACCUCAGCCUUCCAAGCU
GAUGAUGCGGGUUCGAUUCCCGCUGCCCGCUCCAAGAUGU
.((..(((.(((((((.........((......))(((((.......)))))....(((((.......)))))))))))))))..))... (-30.90)

Length sequence

: 90

Length match:

69