gi_545778205_gb_U000_476

cmsearch-Rfam

Family :

tRNA-Sec

Id:

RF01852

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

not description

Score:

29.4

E-value:

0.0017

From sequence:

4496405

To sequence:

4496485

Alignments:

                                      v      vv       vv   v                 v vv              vv                NC
                               (((((((((,,<<<<<.<____>>>>>><<<<<<_______>>>>>>,<<<<<________>>>>>,,<<<<_______>> CS
               RF01852       1 Gggggggcgaucggcc.cUGGUgggccguccGGgCUUCAAAcCCggaGggggcuagcaacggccccgGggGGUUCGAUUCC 80     
                               G::G::G+G  ::G   : GGU:  C:: :::G: U  AAA:C::: G     UAG+AA++   C  G::GGUUCGA UCC
  gi_545778205_gb_U000 4496405 GCCGAAGUG--GCGAAaUCGGUAGACGCAGUUGAUUCAAAAUCAACCG-----UAGAAAUA---CGUGCCGGUUCGAGUCC 4496475
                               ******986..9995559*****99*********9999999****999.....34444322...2369************* PP

                                  v        NC
                               >>))))))))) CS
               RF01852      81 cccgccccccC 91     
                               ::C C::C::C
  gi_545778205_gb_U000 4496476 GGC-CUUCGGC 4496485
                               **7.9****** PP

>>

RNAfold
>gi_545778205_gb_U000_476
CAGUGCCGAAGUGGCGAAAUCGGUAGACGCAGUUGAUUCAAAAUCAACCG
UAGAAAUACGUGCCGGUUCGAGUCCGGCCUUCGGCACCAA
..(((((((((..(((...((....))))).(((((((...)))))))((((....)))).(((((.......))))))))))))))... (-35.60)

Length sequence

: 90

Length match:

79