gi_545778205_gb_U000_477

cmsearch-Rfam

Family :

tRNA-Sec

Id:

RF01852

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

not description

Score:

38.6

E-value:

6.9e-06

From sequence:

780552

To sequence:

780627

Alignments:

                                             v      v                                                          NC
                              (((((((((,,<<<<<<____>>>>>><<<<<<_______>>>>>>,~~~~~~,,<<<<_______>>>>.))))))))) CS
               RF01852      1 GggggggcgaucggcccUGGUgggccguccGGgCUUCAAAcCCggaG*[18]*gGggGGUUCGAUUCCcc.cgccccccC 91    
                              G:GGG::::  :::C  U G   G:::::::G:CUU  AA:C::::G       G::GGUUCGA UCC:: ::::CCC:C
  gi_545778205_gb_U000 780552 GUGGGUCGUUAGCUCAGUUGGUAGAGCAGUUGACUUUUAAUCAAUUG*[ 2]*CGCAGGUUCGAAUCCUGcACGACCCAC 780627
                              ***************965555579***********************...4..57************************* PP

>>

RNAfold
>gi_545778205_gb_U000_477
CGAAAAAGUGGGUCGUUAGCUCAGUUGGUAGAGCAGUUGACUUUUAAUCA
AUUGGUCGCAGGUUCGAAUCCUGCACGACCCACCAAUCGCU
(((....(((((((((((.(......).))((.(((((((.......))))))).))(((((.......))))))))))))))...))).. (-32.70)

Length sequence

: 91

Length match:

74