gi_545778205_gb_U000_479

cmsearch-Rfam

Family :

tRNA-Sec

Id:

RF01852

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

not description

Score:

33.1

E-value:

0.00018

From sequence:

781147

To sequence:

781218

Alignments:

                                     v       v      v                                                v        NC
                              (((((((((,,<<<<<<____>>>>>><<<<<<_______>>>>>>,~~~~~~,,<<<<_______>>>>))))))))) CS
               RF01852      1 GggggggcgaucggcccUGGUgggccguccGGgCUUCAAAcCCggaG*[18]*gGggGGUUCGAUUCCcccgccccccC 91    
                              GGG::G:    :::C  U G   G:::::::G:CUU  AA:C::::G       G::GGUUCGA UCC::  :C::CCC
  gi_545778205_gb_U000 781147 GGGUCGUU--AGCUCAGUUGGUAGAGCAGUUGACUUUUAAUCAAUUG*[ 2]*CGCAGGUUCGAAUCCUG-CACGACCC 781218
                              ***99986..8***9865555579***********************...4..57***************.58999*** PP

>>

RNAfold
>gi_545778205_gb_U000_479
CCACCACUCGGGUCGUUAGCUCAGUUGGUAGAGCAGUUGACUUUUAAUCA
AUUGGUCGCAGGUUCGAAUCCUGCACGACCCACCAGUUUUA
.....(((.(((((((((.(......).))((.(((((((.......))))))).))(((((.......))))))))))))...))).... (-27.70)

Length sequence

: 91

Length match:

70