gi_545778205_gb_U000_480

cmsearch-Rfam

Family :

tRNA-Sec

Id:

RF01852

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

not description

Score:

36.4

E-value:

2.6e-05

From sequence:

781368

To sequence:

781441

Alignments:

                                      v      v      v                                               v         NC
                              (((((((((,,<<<<<<____>>>>>><<<<<<_______>>>>>>,~~~~~~,,<<<<_______>>>>))))))))) CS
               RF01852      1 GggggggcgaucggcccUGGUgggccguccGGgCUUCAAAcCCggaG*[18]*gGggGGUUCGAUUCCcccgccccccC 91    
                               GGG::G:   :::C  U G   G:::::::G:CUU  AA:C::::G       G::GGUUCGA UCC:: :C::CCC 
  gi_545778205_gb_U000 781368 UGGGUCGUU-AGCUCAGUUGGUAGAGCAGUUGACUUUUAAUCAAUUG*[ 2]*CGCAGGUUCGAAUCCUGCACGACCCA 781441
                              ********9.7***9865555579***********************...4..57************************ PP

>>

RNAfold
>gi_545778205_gb_U000_480
CACCCGUAUGGGUCGUUAGCUCAGUUGGUAGAGCAGUUGACUUUUAAUCA
AUUGGUCGCAGGUUCGAAUCCUGCACGACCCACCAAUUUAA
........((((((((((.(......).))((.(((((((.......))))))).))(((((.......)))))))))))))......... (-28.60)

Length sequence

: 91

Length match:

72