gi_545778205_gb_U000_482

cmsearch-Rfam

Family :

tRNA-Sec

Id:

RF01852

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

not description

Score:

28.0

E-value:

0.0039

From sequence:

925971

To sequence:

925888

Alignments:

                                     v      vv      vv                                                            NC
                              (((((((((,,<<<<<<____>>>.>>><<<<<<_______>>>>>>,<<<<<________>>>>>,,<<<<_______>>>> CS
               RF01852      1 GggggggcgaucggcccUGGUggg.ccguccGGgCUUCAAAcCCggaGggggcuagcaacggccccgGggGGUUCGAUUCCcc 82    
                              GG:G:GG+G  :::   UGG     ::::C:: :CU  AAA: ::G: :::::   +    ::::: GGGGGUUCGA UCCCC
  gi_545778205_gb_U000 925971 GGUGAGGUG--UCCGAGUGGCUGAaGGAGCACGCCUGGAAAGUGUGU-AUACGGCAA----CGUAUCGGGGGUUCGAAUCCCC 925896
                              ******987..777667777554415556666666666666666665.788877777....888888***************9 PP

                               v        NC
                              ))))))))) CS
               RF01852     83 cgccccccC 91    
                              C CC:C:CC
  gi_545778205_gb_U000 925895 C-CCUCACC 925888
                              7.99***** PP

>>

RNAfold
>gi_545778205_gb_U000_482
GGCGGUGAGGGGGGGAUUCGAACCCCCGAUACGUUGCCGUAUACACACUU
UCCAGGCGUGCUCCUUCAGCCACUCGGACACCUCACCAAAU
...((((((((((((.......))))).(((((....)))))........(((.((.(.(((.....)))).)).)))..))))))).... (-31.00)

Length sequence

: 91

Length match:

82