Alignments: v v v NC
:::::::((((((-(((((((((--((((((((-----------(((,<<<<<<<<<______>>>>>>>>>,<<<<<<<- CS
RF01731 1 UauggaAgcagcuUagauacUcuUuaauuuucccuuuAaacACAGcaAugccCggaCAuGGAUGuccGggcaAGccguaaa 81
U +A :: : :::U C:CU AA C G:: :: :C::ACAUGGAUGU::G: ::AG::::::
gi_545778205_gb_U000 2229367 UCAAAAUUGCCGAGGCGUUCCCUG-------------AAGGCCGGGG-CA-GCCCACAUGGAUGUGGGC-UGAGGGCGCG- 2229304
***********************8.............4555599999.*7.******************.7*********. PP
v v v v v NC
---<<<______>>>---->>>>>>>,,,)))----------------------))))))))--)))))))-)))))))): CS
RF01731 82 cGcGCCAUGGAuGGCGCGUuuacggCGGUugCGUCAaguauaaAaAcccuuaauggaaaauuUuagAguauCcuagcugcG 162
+ :CA GGAUG: C U::::::CG ::CG A + UAA + + AG:G A:C:: : :: G
gi_545778205_gb_U000 2229303 UUUUACAGGGAUGUUACCUCGCGCCCGA-CCCGGUAGCCGUAAGGGAUAAGCCG----------AGGGCACCGCGCAGCGG 2229234
77799***********************.********99999999999999999..........***************** PP
NC
:::::: CS
RF01731 163 uAguuu 168
UUU
gi_545778205_gb_U000 2229233 CGAUUU 2229228
****** PP
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