cmsearch-Rfam

Family :

Id:

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Description:

Score:

E-value:

From sequence:

To sequence:

Alignments:

                               :::::::::::::::::::::::::: CS
               RF01985      32 AAAGgCACCUUUGGUUACCUGAAUGG 57     
                               AAAGgCACCUUUG UUACCUGA UGG
  gi_545778205_gb_U000 3845997 AAAGGCACCUUUGCUUACCUGAUUGG 3845972
                               789*******************9996 PP



Internal HMM-only pipeline statistics summary: (run for model(s) with zero basepairs)
--------------------------------------------------------------------------------------
Query model(s):                                          1  (61 consensus positions)
Target sequences:                                        1  (9283304 residues searched)
Windows passing local HMM SSV      filter:             942  (0.01551); expected (0.02)
Windows passing local HMM MSV bias filter:             932  (0.01535); expected (0.02)
Windows passing local HMM Viterbi  filter:              53  (0.0008537); expected (0.001)
Windows passing local HMM Forward  filter:               1  (1.508e-05); expected (1e-05)
Total HMM hits reported:                                 1  (2.801e-06)

# CPU time: 0.37u 0.00s 00:00:00.37 Elapsed: 00:00:00.10
//

RNAfold

Length sequence

Length match: