gi_545778205_gb_U000_54

cmsearch-Rfam

Family :

DicF

Id:

RF00039

Type:

Gene; antisense;

Taxonomy:

Bacteria;

Ontology:

GO:0003729 mRNA binding

Description:

DicF RNA is an antisense inhibitor of cell division gene ftsZ [1].

Score:

29.7

E-value:

0.00028

From sequence:

1201253

To sequence:

1201200

Alignments:

                                                                                         NC
                               ::::::::::::::<<<<<<<-<<<<____.._______...>>>>--->>>>>>>: CS
               RF00039       1 UUuuuGUGauaUUUGGCGGuAUCAGuUUUA..CUCcGUu...aCUGaUcUgCCGCCC 52     
                               U U+UGU A   UUGGCGG:A CAG:UUU   CU++GU    :CUG   U:CCGCCC
  gi_545778205_gb_U000 1201253 UGUGUGU-AGUCUUGGCGGUACCAGUUUUUucCUUAGUCcuuUCUG--GUACCGCCC 1201200
                               *******.666789************8765225555555677****..788****** PP

RNAfold
>gi_545778205_gb_U000_54
GGCGGUACCAGAAAGGACUAAGGAAAAAACUGGUACCGCCAAGACUACAC
ACA
(((((((((((..................)))))))))))............. (-20.70)

Length sequence

: 53

Length match:

52