gi_545778205_gb_U000_55

cmsearch-Rfam

Family :

DicF

Id:

RF00039

Type:

Gene; antisense;

Taxonomy:

Bacteria;

Ontology:

GO:0003729 mRNA binding

Description:

DicF RNA is an antisense inhibitor of cell division gene ftsZ [1].

Score:

40.3

E-value:

3.4e-07

From sequence:

1418465

To sequence:

1418410

Alignments:

                                                  v                           v       NC
                               ::::::::::::::<<<<<<<-<<<<________~~~~~>>>>--->>>>>>>: CS
               RF00039       1 UUuuuGUGauaUUUGGCGGuAUCAGuUUUACUCc*[3]*aCUGaUcUgCCGCCC 52     
                               U U+UGU++U   UGGCGG+AUCAG:UUU  UC+     :CUGAU U CCGCCC
  gi_545778205_gb_U000 1418465 UGUGUGUAGUCC-UGGCGGCAUCAGUUUUUUUCU*[9]*GCUGAUGU-CCGCCC 1418410
                               *******88877.6***************99875..7..********.****** PP

>>

RNAfold
>gi_545778205_gb_U000_55
GGCGGACAUCAGCCGAACUUCAAGAAAAAAACUGAUGCCGCCAGGACUAC
ACACA
(((((.((((((...................)))))))))))............. (-16.80)

Length sequence

: 55

Length match:

54