gi_545778205_gb_U000_57

cmsearch-Rfam

Family :

DnaX

Id:

RF00382

Type:

Cis-reg; frameshift_element;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This family represents a ribosomal frameshifting element found in the mRNA of the dnaX gene in
E. coli. The dnaX gene has two encoded products tau and gamma which are produced
in a 1:1 ratio. The gamma protein is synthesised due to programmed frameshifting and is
shorter than tau. The two products of the dnaX gene are DNA polymerase III subunits
[1,2].

Score:

96.8

E-value:

1e-21

From sequence:

493356

To sequence:

493420

Alignments:

                                                                                                NC
                              :::::::::::::::::::::::::::::::<<<<<<-<<<<<_____>>>->>->>>>>>:::: CS
               RF00382      1 uGCAGGGAGCAACCAAaaCAAAAAAGAGUGAACCGGcAGCCgCuacccGcGCGCGgCCGGUGAAU 65    
                              UGCAGGGAGCAACCAAA+CAAAAAAGAGUGAACCGGCAGCCGCUACCCGCGCGCGGCCGGUGAAU
  gi_545778205_gb_U000 493356 UGCAGGGAGCAACCAAAGCAAAAAAGAGUGAACCGGCAGCCGCUACCCGCGCGCGGCCGGUGAAU 493420
                              ***************************************************************** PP

RNAfold
>gi_545778205_gb_U000_57
GCAGGGAGCAACCAAAGCAAAAAAGAGUGAACCGGCAGCCGCUACCCGCG
CGCGGCCGGUGAAU
((.((......))...))........((..((((((.(((((.....))).)).))))))..)) (-21.60)

Length sequence

: 64

Length match:

63