gi_545778205_gb_U000_60

cmsearch-Rfam

Family :

frnS

Id:

RF01796

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

134.0

E-value:

1.1e-25

From sequence:

1409129

To sequence:

1409246

Alignments:

                                                                                                                 NC
                               <<<<--<<<<<<<<<<<<________>>>>>>>>>>>>----->>>>,,,,,,,,,,,,,,,<<<<<<-<<<<_>>>>--- CS
               RF01796       1 gCagGUGAgugCAaCGucAAGCGAUGggCGuUGcgcUCCAUAauuGuauUacUUcuuuUuUUgagucacUgcaUagcAuAA 81     
                               GCAGGUGA:UGCAACGUCAAGCGAUGGGCGUUGCG:UCCAUA UUGU+UUACUUC+UUUUUUGA:U:ACUGCAUAGCA+AA
  gi_545778205_gb_U000 1409129 GCAGGUGAAUGCAACGUCAAGCGAUGGGCGUUGCGCUCCAUA-UUGUCUUACUUCCUUUUUUGAAUUACUGCAUAGCACAA 1409208
                               ******************************************.************************************** PP

                                                                      NC
                               ->>>>>>,,,,,,,<<<<<<<<____>>>>>>>>:::: CS
               RF01796      82 UugacucuUacgAuGCCGacguuaauacguCGGCuUUU 119    
                               UU:A:UC UACGA+GCCGAC::U+AU::GUCGGCUUUU
  gi_545778205_gb_U000 1409209 UUGAUUCGUACGACGCCGACUUUGAUGAGUCGGCUUUU 1409246
                               ************************************** PP

RNAfold
>gi_545778205_gb_U000_60
GCAGGUGAAUGCAACGUCAAGCGAUGGGCGUUGCGCUCCAUAUUGUCUUA
CUUCCUUUUUUGAAUUACUGCAUAGCACAAUUGAUUCGUACGACGCCGAC
UUUGAUGAGUCGGCUUUUU
....(.((.(((((((((........))))))))).))).....(((.(((..........((((((.(((...)))....))))))))).)))((((((((....))))))))..... (-31.50)

Length sequence

: 119

Length match:

116