gi_545778205_gb_U000_64

cmsearch-Rfam

Family :

GcvB

Id:

RF00022

Type:

Gene;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

The gcvB gene encodes a small untranslated RNA involved in expression of the dipeptide and oligopeptide
transport systems in Escherichia coli. Included several unknown homologues in alignment (Bateman A pers obs).

Score:

181.3

E-value:

3.4e-44

From sequence:

2942696

To sequence:

2942901

Alignments:

                                                                                                                 NC
                               ::::::::<<<<--<<----<<<<<<-<<<<<<<<____>>>>>>>>>>>>>>>>>>>>,,,,,,,,,,,,,........, CS
               RF00022       1 aCuucauuAgccggaacGAcaagcucuuucggucuuucuagaccgaagagcuuuuggcUUAaggUUgUGAUG........U 73     
                               ACUUC+U+AGCCGGAACGA+AAG:U:U::C:G::: ++U:::C:G:::A:CUUUUGGCUUA GGUUGUGAUG        U
  gi_545778205_gb_U000 2942696 ACUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGGUGAACUUUUGGCUUACGGUUGUGAUGuuguguugU 2942776
                               ********************************************************************************* PP

                                                  v    v                                                         NC
                               ,,,,,,,,,,,,<<<<<<<<____>>>>>>>>,<<<<<<_____>>>>>>,,,,,.,,,,,,,,,,<<<<<__________ CS
               RF00022      74 UGUGUUUGCAaaugGuCUgguaaaccAGaCcaugGuagcaauuagcuaCcuaUUU.CACUUCCUGUacauuUauucugucU 153    
                               UGUGUUUGCAA+UGGUCUG +A+  CAGACCAUGGUAGCAA  AGCUACCU+UUU CACUUCCUGUACAUUUA++CUGUCU
  gi_545778205_gb_U000 2942777 UGUGUUUGCAAUUGGUCUGCGAU-UCAGACCAUGGUAGCAA--AGCUACCUUUUUuCACUUCCUGUACAUUUACCCUGUCU 2942854
                               **********************9.*****************..*******888888************************* PP

                                                                                  NC
                               ____.....____>>>>>,<<<<<<<<________>>>>>>>>::::::: CS
               RF00022     154 GUCu.....GaUUaauguuagCACCGCcuuuUuuuGCGGUGcuUUUUUuU 198    
                               GUC+     GAUUAAUGU AGCACCGCCU++U  UGCGGUGCUUUUUUUU
  gi_545778205_gb_U000 2942855 GUCCauaguGAUUAAUGU-AGCACCGCCUAAU--UGCGGUGCUUUUUUUU 2942901
                               *****************8.**********999..9*************** PP

>>

RNAfold
>gi_545778205_gb_U000_64
CUUCCUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGUGUUCUGGUGAAC
UUUUGGCUUACGGUUGUGAUGUUGUGUUGUUGUGUUUGCAAUUGGUCUGC
GAUUCAGACCAUGGUAGCAAAGCUACCUUUUUUCACUUCCUGUACAUUUA
CCCUGUCUGUCCAUAGUGAUUAAUGUAGCACCGCCUAAUUGCGGUGCUUU
UUUUU
.....(((((((((......(((((.((((((((....)))))))))))))))))))))).((..((((......(((((.......)))))(((((((.....))))))).((((((...)))))).....))))..))..((((((...(((((......)))).)...))))))(((((((......)))))))........ (-61.00)

Length sequence

: 205

Length match:

204