gi_545778205_gb_U000_65

cmsearch-Rfam

Family :

GlmY_tke1

Id:

RF00128

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This family consists of a number of bacterial RNA genes of around 167 bases in length.
The tke1 RNA gene is present in Escherichia coli, Shigella flexneri, Yersinia pestis and Salmonella
species where it is found between the yfhK and purL genes. The function of this
RNA is unknown.

Score:

144.4

E-value:

9.4e-34

From sequence:

2691340

To sequence:

2691193

Alignments:

                                                                                                                 NC
                               ::::<<<<<<<<------<<<<<<-<<<_____________________>>>>>>>>>------>>>>>>->>-------- CS
               RF00128       1 AGUuGCUCAUUCAcCUuuuUAUGacaGccccCuauuuaGcagAauaugcgCuuCAUAaacuauCGAAUGAuGCcuAAGaau 81     
                               AGU GCUCAUUCACC ++UUAUG:CAGC   C++UU +G     +A G+GCU:CAUAAA+U  CGAAUGA+GC+ AA  A+
  gi_545778205_gb_U000 2691340 AGUGGCUCAUUCACCGACUUAUGUCAGC---CCCUUCGG-----GACGUGCUACAUAAAAU-ACGAAUGACGCACAA-CAA 2691270
                               ****************************...9999****.....9****************.9**************.9** PP

                                                                                                                 NC
                               (((((((,,<<<<<-------<<<<<<______________>>>>>>------>>>>>,<<<_____>>>))))))):::: CS
               RF00128      82 GGuGCCUauCGuCCAaCuaACuGaUAacauguGaauacaCuuUAuCaAaCAUCGGaCGAcACGUuGAGUgAGGCaCCGCCU 162    
                               GGUGCCU++CG:CCAACU+ CUGAUA:CA   G+ UA +CU:UAUCAA CAUCGG:CGA:ACGU GAGU:AGGCACCGCCU
  gi_545778205_gb_U000 2691269 GGUGCCUGCCGUCCAACUU-CUGAUAUCA---GCGUA-GCUAUAUCAACCAUCGGGCGAAACGUCGAGUUAGGCACCGCCU 2691194
                               *******************.*********...99999.******************************************* PP

                                 NC
                               : CS
               RF00128     163 a 163    
                               +
  gi_545778205_gb_U000 2691193 U 2691193
                               * PP

>>

RNAfold
>gi_545778205_gb_U000_65
AUGGAAUAAGGCGGUGCCUAACUCGACGUUUCGCCCGAUGGUUGAUAUAG
CUACGCUGAUAUCAGAAGUUGGACGGCAGGCACCUUGUUGUGCGUCAUUC
GUAUUUUAUGUAGCACGUCCCGAAGGGGCUGACAUAAGUCGGUGAAUGAG
CCACUGGUUACUA
.....((((.(.(((((((...........(((.(((((..((((((((((...))).)))))))..))))).))).))))))).).))))((.(((((((...(((((((..((.(((((...))))))))))))))....)))))))))............ (-48.30)

Length sequence

: 163

Length match:

146