gi_545778205_gb_U000_66

cmsearch-Rfam

Family :

GlmY_tke1

Id:

RF00128

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This family consists of a number of bacterial RNA genes of around 167 bases in length.
The tke1 RNA gene is present in Escherichia coli, Shigella flexneri, Yersinia pestis and Salmonella
species where it is found between the yfhK and purL genes. The function of this
RNA is unknown.

Score:

66.8

E-value:

7.8e-14

From sequence:

3986434

To sequence:

3986582

Alignments:

                                                      v v            vv                                          NC
                               ::::<<<<<<<<------<<<<<<-<<<__~~~~~~>>>>>>>>>------>>>>>>->>-----....---(((((((,, CS
               RF00128       1 AGUuGCUCAUUCAcCUuuuUAUGacaGccc*[19]*gCuuCAUAaacuauCGAAUGAuGCcuAAG....aauGGuGCCUau 90     
                               AG UGCUCAUUC +  U+UUAUG + GCC+      GC  CAUAAACU + GAAUGA+GC+ A      +A GGUGC:UAU
  gi_545778205_gb_U000 3986434 AGAUGCUCAUUCCAUCUCUUAUGUUCGCCU*[ 4]*GCCUCAUAAACUCCGGAAUGACGCAGAGCcguuUACGGUGCUUAU 3986512
                               ************************999953...4..999**********************998777779*********** PP

                               v           v                        v            v v         v             NC
                               <<<<<-------<<<<<<______________>>>>>>------..>>>>>,<<<_____>>>)))))))::::: CS
               RF00128      91 CGuCCAaCuaACuGaUAacauguGaauacaCuuUAuCaAaCAUC..GGaCGAcACGUuGAGUgAGGCaCCGCCUa 163    
                                GUCCA CU AC GAU::C    G+ UA +C ::AUC  ACA C  GGAC   ACGUUGAGU A:GCACC  CU+
  gi_545778205_gb_U000 3986513 CGUCCA-CUGACAGAUGUC----GCUUAUGCCUCAUCAGACACCauGGACACAACGUUGAGUGAAGCACCCACUU 3986582
                               *****5.6677*******9....899999***********999888***************************** PP

RNAfold
>gi_545778205_gb_U000_66
ACGAGUAGAUGCUCAUUCCAUCUCUUAUGUUCGCCUUAGUGCCUCAUAAA
CUCCGGAAUGACGCAGAGCCGUUUACGGUGCUUAUCGUCCACUGACAGAU
GUCGCUUAUGCCUCAUCAGACACCAUGGACACAACGUUGAGUGAAGCACC
CACUUGUUGUCA
(((.((...((((((((((.....(((((..(((....)))...))))).....))))))).)))..)))))....(((((((..((((((.((.(.((((..((....))..)))).).))...)))))..........)..)))))))............ (-40.90)

Length sequence

: 162

Length match:

147