gi_545778205_gb_U000_69

cmsearch-Rfam

Family :

GlsR23

Id:

RF02486

Type:

Gene; snRNA; snoRNA; HACA-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF02486

Description:

not description

Score:

26.5

E-value:

0.0033

From sequence:

3533462

To sequence:

3533607

Alignments:

                                                     v                   v                                       NC
                               :::::::::::::::::<<<.<<<<-------------<<<<<--<--------...-<<<<_____>>>>---------- CS
               RF02486       1 GAcuUaGAUACUGACAUaCc.GCaGCUGguAuAAAAAAuCGcCUuGuCGuCUCa...UGCCuACGAUgGGCUAaaGAAaua 77     
                               G  +U GAU  UGA  UACC G :GC G+U +AA   A CGC U    G+   +     CC:ACG U:GG  A+A A +++
  gi_545778205_gb_U000 3533462 GUUCUCGAUGAUGAACUACCuGCUGCCGCUGAAAGGUAUCGCUUCUAUGCACUGcucCGCCAACG-UUGGUGAGAAAGGCG 3533541
                               **************999975499***********************9998766511146666776.57999999******* PP

                                   v                               v                                    NC
                               >--->>>>>------------------------->>>>>>>::::::::::::::::::::::::::::::: CS
               RF02486      78 CuGUGgCGaaACAuGCACUGGGUGGCCAUUGCGUCuGCgGuAGAuCCGCCGAUUCCACAGCCCAGAAACAuC 149    
                                UGU GCG      G  CU    GGCC UU CG C: CGGUA A CC CC  UUCCAC G CC GAAAC UC
  gi_545778205_gb_U000 3533542 AUGUUGCGGU----GUUCU--UCGGCCUUUCCGGCACCGGUAAAACCACCCUUUCCACCGACCCGAAACGUC 3533607
                               ********95....44444..579************************************************ PP

RNAfold
>gi_545778205_gb_U000_69
UGUUCUCGAUGAUGAACUACCUGCUGCCGCUGAAAGGUAUCGCUUCUAUG
CACUGCUCCGCCAACGUUGGUGAGAAAGGCGAUGUUGCGGUGUUCUUCGG
CCUUUCCGGCACCGGUAAAACCACCCUUUCCACCGACCCGAAACGUCGC
.((((........))))((((.(.(((((..((((((((((((..(..(((.((..(((((((....))))).)).)))))..)..)))))........))))))))))))).))))................((((.......)))). (-42.50)

Length sequence

: 149

Length match:

144